SPIDER: SPtial Interaction-encoDed intErface decipheR

SPIDER constructs cell-cell interaction interfaces constrained by cellular interaction capacity,

and profiles and identifies spatially variable interaction signals with support from downstream transcript factors and multiple probabilistic models.

General

• Installation
  • Prerequisite
  • PyPI
• API Documentation
  • Class SPIDER
  • Module preprocess.py
  • Module svi.py

Tutorials

• Tutorials
  • Comparison of SPIDER (PDAC dataset)
  • SPIDER SVIs (stereo-seq mouse brain dataset)
  • SVI patterns (slide-seq mouse brain dataset)